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T., Chemoenzymatic synthesis of triazole-linked glycopeptides.

Living Radical Polymerization as a Tool for the Synthesis of Polymer-Protein/Peptide Bioconjugates.

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H., His6 tag-assisted chemical protein synthesis.

The bacteriophage T4 encodes ten proteins known collectively as the replisome. These proteins are responsible for the replication of the phage genome and are divided into three activities: replicase, primosomal, and Okazaki repair. T4 DNA polymerase is part of the replicase, along with the gene 45 sliding clamp, the gene 44 and 62 encoded ATP-dependent clamp loader, and the gene 32 single stranded DNA binding protein (Frankllin et al. 2001, and Mueser et al. 2010). T4 DNA polymerase is active as a monomer, but it has been suggested that dimerization is necessary for coordination of leading and lagging strand synthesis (Salinas and Benkovic 2000).

M., Synthesis of bio-inspired hybrid polymers using peptide synthesis and protein engineering.

Glen Research is delighted to introduce a GalNAc modification strategy using a monomeric GalNAc support and the equivalent GalNAc phosphoramidite. Our experimental work has shown that these products are fully compatible with regular oligonucleotide synthesis and deprotection. Oligonucleotides containing GalNAc can be deprotected using standard procedures during which the acetyl protecting groups on the GalNAc group are removed. Glen Research offers these GalNAc C3 products under an agreement with AM Chemicals LLC.

Protein Synthesis -Translation and Regulation

M., Synthesis and single enzyme activity of a clicked lipase-BSA hetero-dimer.

One-Pot Synthesis of 1,2,3-Triazoles from Benzyl and Alkyl Halides, Sodium Azide and Alkynes in Water under Transition-Metal-Catalyst Free Reaction Conditions.

It is also important to address other potential cellular events that may generate IAV genomic mutations during viral life cycle. One potential mechanism well established is host enzymes that can chemically alter the structures of the nucleotide substrates. APOBEC3G is a host cytidine deaminase which can convert to C to U in the proviral DNA of HIV-1, and this event induce the G to A mutation in viral genomic DNA post reverse transcription, leading to lethal mutagenesis . Interestingly, however, HIV-1 evolved to encode a unique accessory protein, Vif, which counteracts the APOBEC3G and escape from the lethal mutagenesis effect of APOBEC3G. Interestingly, while influenza virus infection elevates the APOBEC3G expression, no anti-viral activity was detected . It was also reported that another type of host deaminase, APOBEC3F, appears not to display anti-influenza virus effect. In addition, various oxidated NTPs can be also incorporated during viral RNA synthesis, which may also affect IAV mutagenesis. Thus further studies on the mechanistic interplays of IAV evolution with the IAV Pol fidelity and other viral and host factors that can produce the IAV genomic mutations are necessary to firmly address the sources of the IAV genomic mutagenesis.

The fidelity of protein synthesis: ..

W., Protein semi-synthesis: New proteins for functional and structural studies.

As mentioned, the process of transcription occurs in the nucleus of eukaryotic cells and requires that the two strands of DNA separate, or open up sufficiently enough so that complementary RNA nucleotides can be added to one side of the DNA molecule. The strand that is copied is the template strand. The enzyme RNA polymeraseseparates the DNA strands and joins the RNA nucleotides along the exposed DNA template. This process is initiated when certain proteins, transcription factors, bind to a specific starting point, the promoter. The promoter is actually a sequence of DNA bases that signals the beginning of RNA synthesis. RNA polymerase then adds nucleotides to the 3' end of the elongating RNA molecule. The enzyme then moves down the DNA strand, unwinding as it goes and allowing the DNA helix to reform after a sequence has been transcribed. This continues until a specific RNA sequence is transcribed. This sequence, the terminator sequence, signals the end of RNA synthesis. Transcription is broken down into three stages: initiation, elongation, and termination.

In addition to mRNA, two other types of RNA are needed for protein synthesis. These are ribosomal RNA (rRNA) and transfer RNA (tRNA). Ribosomal RNA combines with proteins to form ribosomes. Ribosomes are cellular structures where polypeptides form. Ribosomes actually consist of two subunits: one large and one small.

A., Selective Dye-Labeling of Newly Synthesized Proteins in Bacterial Cells.
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  • Protein synthesis - WikiVisually

    Syntheses of Hemoprotein Models that can be Covalently Attached onto Electrode Surfaces by Click Chemistry.

  • The rate of protein synthesis is higher in ..

    S.; Jin, S.-H., Synthesis of Fréchet type dendritic benzyl propargyl ether and Fréchet type triazole dendrimer.

  • ribosomes and protein synthesis | Download eBook pdf, …

    J., Synthesis and Evaluation of Coumermycin A1 Analogues that Inhibit the Hsp90 Protein Folding Machinery.

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two other types of RNA are needed for protein synthesis

Similar to TnaC described above, the peptide SecM exists solely to stallthe ribosome synthesizing it. But unlike TnaC, which also requires thepresence of high levels of trytophan, SecM has an intrinsic stallingcapability. Stalling of the ribosome synthesizing SecM provides time fora downstream RNA helix on the same mRNA strand to unwind. Unwinding ofthis helix then allows for a new ribosome to bind and synthesize anew protein, SecA, a bacterial ATP-driven translocase that aids the passage ofnascent proteins across membranes in conjunction with SecY (see also ). When sufficient levels of SecA have been reached,SecA interacts with the SecM-stalled ribosome to pull on SecM, freeingit and allowing translation to resume (illustrated schematically inFig. 13). SecM, which serves no otherpurpose than to stall the ribosome, is released into the cell anddegraded.

Mechanisms of Protein Synthesis by the Ribosome

The structural basis for TnaC-mediated translational stalling wasaddressed by obtaining a 5.8-Å cryo-EM map of the ribosome stalled byTnaC and high concentrations of tryptophan (Fig. 8). The cryo-EM datashows that the nascent chain adopts a distinct conformation in the exittunnel. We applied MDFF to obtain an atomic model of the entire ribosomeand the stalling nascent chain (Fig. 8F). The model allowed us to mapthe contacts between TnaC and the exit tunnel, as well as proposepossible communication pathways that would lead to inactivation of thecatalytic center of the ribosome (the so-called peptidyltransferasecenter, or PTC). One of the main findings was that two criticalribosomal residues at the PTC adopt conformations that are incompatiblewith cohabitation by release factors, which catalyze termination ofprotein synthesis.

family A enzyme implicated in translesion synthesis ..

Thus, we reasoned about the disagreement between high genetic variability of IAV and relatively high enzyme fidelity of IAV Pol complex found in this report. IAV has a replication (RNA synthesis) strategy that amplifies their genomes many times per infection by using exclusively their own polymerase complex without any assistance from host RNA polymerases. This is contrasted to retroviruses (i.e. HIV-1) that replicate their single stranded RNA genomes into double-stranded proviral DNA in two ways. First, HIV-1 replicate their RNA genome to proviral double stranded DNA only twice per infection (conversion of (+) single strand RNA genomes to (−) single strand DNA and then conversion of the synthesized (−) DNA to double stranded proviral DNAs) by using their own polymerases. Second, the RNA genomes of every HIV-1 progenies are synthesized by host RNA polymerase II by transcribing the proviral DNA integrated into the host chromosomes. It is a reasonable assumption that the viruses, which require a high level of genomic mutations for their evolution and escape but have only a few chances to replicate their genomes by their own polymerases (i.e. HIV-1), might have evolved to harbor highly error-prone polymerases (i.e. HIV-1 RT) to generate sufficient mutations in really limited chances. In contrast, due to numerous rounds of the amplification of single viral RNA genomes to viral RNAs only by the viral polymerase, IAV Pol has ample chances to make and accumulate genomic mutations in each viral infection cycle. It has been estimated that the viral burst size in case of influenza, in one cycle of replication, is about 1000 , and thus influenza virus should undergo ~1000 rounds of genome replication solely by viral RNA polymerase. If IAV Pol complex is highly error-prone, like HIV-1 RT, then this may cause the excessive production of unwanted genomic mutations, ultimately leading to catastrophic mutagenesis. Thus, it can be hypothesized that the high enzyme fidelity nature of IAV Pol complex which was observed in this study may enable the viruses to avoid this lethal hypermutagenesis. However, even with high enzyme fidelity, the multiple amplification replication strategy may allow the IAV to produce genomic mutations sufficient for viral evolution and host adaptation.

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