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Protein Semi-Synthesis in Living Cells

and in protein semisynthesis in living cells

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the protein manufacturing machinery of all living cells

Incorporation of chemical probes into proteins is a powerful way to elucidate biological processes and to engineer novel function. Here we describe an approach that allows ligation of synthetic molecules to target proteins in an intracellular environment. A cellular protein is genetically tagged with one-half of a split intein. The complementary half is linked in vitro to the synthetic probe, and this fusion is delivered into cells using a transduction peptide. Association of the intein halves in the cytosol triggers protein trans-splicing, resulting in the ligation of the probe to the target protein through a peptide bond. This process is specific and applicable to cytosolic and integral membrane proteins. The technology should allow cellular proteins to be elaborated with a variety of abiotic probes.

W., Protein semi-synthesis in living cells

Adherent cells should be microinjected with the tip at 30 to 40° angle, so the tip penetrates the cell by moving in a vertical z-axis movement. The volume injected into cells depends on the pressure and is usually femtoliters to nanoliters. Typically pressures of 5 to 12 kPa are used and injection times are between 0.2 s and 1 s. Ideally injection volume is 10% of the cell volume (). Injections can be performed manually, in which the operator controls the movement of the tip and length of injection. Alternatively, one can use automatic injection. In this case, the Z-line (or vertical movement of the needle into the cell) and length of injection are fixed. This provides more consistency in the volumes being injected into the cells, but it can be troublesome if the cells are not flat or the dish is not level. A tip diameter of ≈0.3 μm is optimal for microinjection of mammalian cells. Increases in tip diameter result in increases in delivery rate, which can cause more cell damage. Decreasing the tip diameter can result in frequent clogging of the tip and loss of sample (once a tip is clogged, it can no longer be used and sample cannot be recovered). For nuclear injection, a smaller shoulder angle on the tip is necessary to limit the delivery of protein into the cytoplasm above the nucleus.

Scientists map protein in living bacterial cells

"Fluorogenic Probes for Monitoring Peptide Binding to Class II MHC Proteins in Living Cells ..

Pellois, J. P.; Muir, T. W., A Ligation and photorelease strategy for the temporal and spatial control of protein function in living cells. 2005, (35), 5713-5717.

Pellois, J. P.; Muir, T. W., Photo-control of the activity, concentration, and localization of proteins in live cells. 2005, (4), 519-519.

Nano to measure protein dynamics in living cells NanoTera

New microscopy technique allows mapping protein synthesis in living tissues and animals

Building on this capability, InMed has also achieved an industry first with its development of a cannabinoid nanoparticle hydrogel as the delivery mechanism for its INM-085 candidate, which is formulated to treat glaucoma by reducing elevated intra-ocular pressure and providing protection to the retinal nerves.

The penultimate enzyme in the melatonin biosynthetic pathway is AANAT (). The diurnal rise and fall of melatonin is governed by the rhythmic phosphorylation of this enzyme at two sites (Thr31 and Ser205) (). Microinjection experiments were key in elucidating the role of phosphorylation in regulation of AANAT activity. The results of studies in which AANAT modified with Pma at Thr31 was injected into cells provided the first direct evidence that Thr31 phosphorylation controls AANAT cellular stability (). Semisynthetic AANAT-Pma31 injected into CHO cells and measured by immunofluorescent staining had 3-fold greater signal than that of unmodified AANAT when assessed at 1 h after cellular microinjection. After 4 h, AANAT-Pma31 continued to show substantial fluorescent signal, whereas the signal from the unmodified enzyme was no longer present. This finding confirmed that phosphorylation at Thr31 protects against proteolytic degradation. Note that the corresponding Glu replacement was unable to mimic this effect, consistent with our understanding of 14-3-3/phosphopeptide interaction (). Phosphorylation at Ser205 was also investigated and yielded the same result; phosphorylation of the residue was important for cellular stability of AANAT (). The findings, coupled with earlier studies that identified 14-3-3 proteins as ligands for phosphorylated AANAT, helped confirm the 14-3-3/phosphorylation-dependent model for AANAT regulation (). In contrast, similar studies conducted with LMW-PTP indicated that phosphorylation did not play a role in regulating the cellular stability of the enzyme ().

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Convergent protein synthesis - ScienceDirect

Camarero, J. A.; Fushman, D.; Cowburn, D.; Muir, T. W., Peptide chemical ligation inside living cells: In vivo generation of a circular protein domain. 2001, (9), 2479-2484.

Applications of Protein | Proteins | Molecular Biology

Nonhydrolyzable phosphonate analogues offer a useful tool for investigating phosphorylated proteins in vivo, as proteins bearing these mimetics are completely resistant to phosphatase activity () (; ; ; , ). Therefore, by incorporating phosphonate analogues into proteins at positions that are normally phosphorylated, it is possible to identify novel interacting proteins by pull-down assays (e.g., phosphatases and phosphopeptide binding domains) and to evaluate protein stability and cellular localization by microinjection assays (; ; , ). However, to incorporate the phosphonate analogues into proteins, the proteins must be amenable to semisynthetic technology. In these procedures, N- and C-terminal peptides (up to 50 amino acids in length) containing the phosphonate substitution(s) can be synthetically prepared using a standard Fmoc solid-phase peptide synthesis (SPPS) strategy and ligated to a recombinant portion of the protein of interest (; ; ; ). In this manner, homogenous, stoichiometrically labeled phosphoproteins can be generated. The marriage of phosphonate analogue technology and protein semisynthetic technology makes it possible to determine which protein domains and enzymes can interact with phosphorylated proteins in live cells and aids in the elucidation of complex signal transduction cascades.

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Hahn, M. E.; Pellois, J.-P.; Vila-Perello, M.; Muira, T. W., Tunable photoactivation of a post-translationally modified signaling protein and its unmodified counterpart in live cells. 2007, (17), 2100-2105.

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Since the discovery of cell surface receptors and second messengers, there has been intensive study of the mechanisms of cell signal transduction. Information flow from the plasma membrane to the nucleus and then back again involves an array of enzymes, adaptor proteins, lipids, and other small molecules whose structural interactions govern cell growth, differentiation, and movement. Among the many cell-signaling pathway regulatory mechanisms, reversible protein phosphorylation stands out as of critical importance. Protein kinases and phosphatases are members of large superfamilies in the human genome, and a large number of these enzymes have been implicated as drug targets for diseases including cancer, diabetes, immune disorders, inflammatory conditions, and cardiovascular conditions (; ; ). Protein phosphorylation catalyzed by the eukaryotic protein kinase superfamily members are typically Ser/Thr or Tyr selective, and there are approximately 400 protein Ser/Thr kinase (PSK) and 100 protein Tyr kinase (PTKs) human genes (). The protein tyrosine phosphatase (PTP) superfamily has about 100 members, whereas the protein Ser/Thr phosphatase (PSP) family numbers about 15 (). It has been estimated that 25% of cellular proteins undergo phosphorylation and are thus substrates of one or more kinase and phosphatase (). Upon phosphorylation, protein structural interactions can be affected in several ways. In many cases, the addition of a phosphate to a protein side chain can inhibit or promote intra- or intermolecular protein-protein interactions. A number of well-characterized domains have been implicated in selectively binding to pSer/pThr and pTyr, respectively (see ). The first of these discovered was the Src homology 2 (SH2) domain, which binds pTyr motifs in proteins. There are about 100 SH2 domains found in human genes (). In addition, phosphotyrosine-binding (PTB) domains also bind pTyr-containing sequences. A number of proteins or protein domains that have been identified as maintaining pSer/pThr binding include 14-3-3 adaptor proteins, Polo-Box domains, WW domains, BRCA1 C-terminal (BRCT) domains, and forkhead-associated (FHA) domains (). Unraveling the complexity of protein phosphorylation functionality is daunting. In general, the identification of specific kinase-substrate interactions and cellular phosphorylation actions for individual cases remains a major challenge. A variety of novel approaches have been developed in recent years to attempt to analyze protein kinases, phosphatases, and the function of individual phosphate modifications (; ; ; ; ). In this review, we discuss the steps required to successfully use protein semisynthesis as a tool to investigate protein phosphorylation, and we outline the practical uses of these semisynthetic proteins.

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